Cinnamon-Topped Rhubarb Yogurt Muffins

Category: Start Your Day Right

These delightful rhubarb muffins combine all-purpose and whole wheat flours with tangy Greek yogurt for a tender, moist texture. Fresh diced rhubarb adds bright pops of flavor throughout, while a cinnamon-sugar topping creates a sweet, crisp finish. The batter comes together quickly—mix dry ingredients, combine with wet ingredients and fold in rhubarb without overmixing. Mound the thick batter in your muffin tin, sprinkle with cinnamon sugar, and bake until golden. Best enjoyed warm from the oven, these versatile muffins can be adapted with other fruits like raspberries or apples, and freeze beautifully for longer storage.

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Updated on Fri, 13 Jun 2025 14:59:57 GMT
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A cupcake with a pink frosting and a sprig of mint on top. | recipesbylena.com

This tangy-sweet rhubarb muffin recipe transforms tart spring stalks into tender, cinnamon-kissed treats perfect for breakfast or afternoon tea. The addition of Greek yogurt creates an irresistibly moist texture while adding a subtle protein boost to these bakery-worthy muffins.

These muffins became my signature spring baking project after discovering an abundance of rhubarb at our local farmers market three years ago. Now my family knows warmer weather has arrived when these muffins appear on our weekend breakfast table.

Ingredients

  • All-purpose flour: Provides structure while keeping the muffins light
  • Whole wheat flour: Adds nutritional value and a subtle nuttiness
  • Greek yogurt: Creates incredible moisture and tenderness while reducing fat
  • Melted butter: Delivers rich flavor that oil simply cannot match
  • Fresh rhubarb: Brings bright tanginess that perfectly balances the sweet batter
  • Cinnamon sugar topping: Creates a delicate sweet crust that makes these irresistible

Step-by-Step Instructions

Prepare Your Equipment:
Preheat your oven to exactly 400°F which creates the perfect environment for the muffins to rise quickly and develop those coveted domed tops. Line your muffin tin completely with paper liners to ensure easy removal after baking.
Mix Dry Ingredients:
Combine both flours, sugar, baking powder, cinnamon, baking soda, and salt in a medium bowl. Whisk thoroughly to ensure even distribution of leavening agents which guarantees uniform rising and texture.
Combine Wet Ingredients:
In a separate large bowl, whisk Greek yogurt, butter, eggs, and vanilla until completely smooth with no visible streaks. The temperature of these ingredients matters ensure butter has cooled slightly but remains liquid for proper incorporation.
Fold Everything Together:
Add dry ingredients to wet mixture using a light hand with your spatula. Stir just until barely combined leaving a few small flour pockets. Overmixing activates gluten and creates tough muffins. Gently fold in diced rhubarb with minimal stirring.
Fill Muffin Cups:
Divide batter generously between all 12 muffin cups allowing it to mound slightly above the rim. This helps create those beautiful domed tops that make bakery-style muffins so appealing.
Apply Topping:
Sprinkle each muffin with cinnamon sugar mixture using your fingertips to gently press it into the batter. This creates a gorgeous crackly sweet crust during baking that perfectly complements the tangy interior.
Bake To Perfection:
Bake for exactly 20-22 minutes until golden brown. Test with a toothpick inserted in the center it should come out clean with perhaps a few moist crumbs but no wet batter.

The combination of Greek yogurt and butter in this recipe creates the perfect balance of moisture and richness. I discovered this secret after years of making too-dry muffins with just butter or too-dense ones with only yogurt. My grandmother always said the perfect muffin should be substantial enough to satisfy but tender enough to pull apart with your fingers this recipe achieves exactly that.

Rhubarb Selection Tips

Choose vibrant red stalks for the best flavor and color in your muffins. The redder the stalk, the sweeter the rhubarb will be. Always discard the leaves as they contain oxalic acid and are toxic. For the best texture in your muffins, dice the rhubarb into small, uniform pieces about ¼-inch in size. This ensures even distribution and prevents soggy pockets in your finished muffins.

Make-Ahead and Storage

These muffins reach their peak flavor within the first 24 hours after baking. Store them at room temperature in an airtight container for up to two days. For longer storage, freeze completely cooled muffins in a ziplock bag with air removed for up to three months. Thaw at room temperature or microwave individual muffins for 20-30 seconds for that fresh-baked taste.

Seasonal Variations

While rhubarb makes these muffins special, this recipe works beautifully with other fruits. In summer, try fresh blueberries or raspberries. Fall calls for diced apples with extra cinnamon in the batter. Winter works wonderfully with frozen cranberries and orange zest. The Greek yogurt base provides the perfect canvas for whatever fruit is in season.

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A plate of muffins with powdered sugar on top. | recipesbylena.com

Recipe FAQs

→ Can I substitute the rhubarb with other fruits?

Yes! This is a versatile muffin base that works wonderfully with other fruits. Try using the same amount (1½ cups) of raspberries, blackberries, or chopped apples instead of rhubarb for equally delicious results.

→ How should I store these muffins?

These muffins are best eaten the day they're baked or the day after. For longer storage, allow them to cool completely, then place in an airtight container and freeze for up to 3 months. Thaw at room temperature or warm slightly in the microwave before serving.

→ Can I make mini muffins instead of standard size?

Absolutely! Use a mini muffin tin and reduce the baking time to 8-10 minutes. Check for doneness with a toothpick inserted into the center - it should come out clean when they're ready.

→ Can I use sour cream instead of Greek yogurt?

Yes, you can substitute an equal amount (1 cup) of sour cream for the Greek yogurt. Both light or regular sour cream will work well in this recipe and provide similar moisture and tanginess.

→ Why is my batter so thick?

The thick batter is intentional and results in perfectly domed, tender muffins. The combination of Greek yogurt and proper flour ratio creates this consistency. When filling your muffin cups, the batter should mound slightly higher than the tops of the cups.

→ How do I know when the muffins are done baking?

The muffins should be golden brown on top and a toothpick inserted into the center should come out clean, with no wet batter. This typically takes 20-22 minutes in a 400°F oven. Let them cool in the pan for 5-10 minutes before transferring to a wire rack.

Rhubarb Muffins with Greek Yogurt

Tender muffins featuring diced rhubarb and Greek yogurt, finished with a sweet cinnamon-sugar topping for the perfect breakfast treat.

Prep Time
15 min
Cooking Time
20 min
Total Time
35 min
By: Lena

Category: Breakfast & Brunch

Skill Level: Medium

Cuisine Type: American

Yield: 12 Serves (12 muffins)

Dietary Preferences: Vegetarian

Ingredients

01 1 cup all-purpose flour
02 1 cup whole-wheat flour
03 ¾ cup granulated sugar
04 2-½ teaspoons baking powder
05 1 teaspoon ground cinnamon
06 ½ teaspoon baking soda
07 ½ teaspoon kosher salt
08 1 cup 2% plain Greek yogurt or sour cream
09 8 tablespoons unsalted butter, melted and cooled slightly
10 2 large eggs
11 1 teaspoon pure vanilla extract
12 1-½ cups ¼-inch-diced rhubarb

→ Topping

13 3 tablespoons granulated sugar
14 ½ teaspoon ground cinnamon

Steps to Follow

Step 01

Preheat the oven to 400°F. Line a 12-cup muffin tin with paper or foil baking cups.

Step 02

In a medium mixing bowl, combine the flours, granulated sugar, baking powder, cinnamon, baking soda, and kosher salt. Whisk to blend.

Step 03

In a large bowl, whisk together the Greek yogurt, melted butter, eggs, and vanilla extract until smooth.

Step 04

Add the dry ingredients to the wet ingredients and gently stir with a spatula until the batter just comes together; do not overmix. Gently fold in the diced rhubarb.

Step 05

Evenly divide the batter among the muffin cups. The batter should mound slightly higher than the rim of the cups.

Step 06

In a small bowl, mix the granulated sugar and ground cinnamon for the topping. Sprinkle about ½ teaspoon of the cinnamon-sugar mixture over each muffin. Pat gently onto the tops with your fingers.

Step 07

Bake the muffins at 400°F for 20-22 minutes, or until golden brown and a toothpick inserted into the center of a muffin comes out clean.

Step 08

Let the muffins cool in the pan for 5-10 minutes, then transfer them to a wire rack to cool completely. Best served warm.

Additional Notes

  1. Best eaten the day of, or the day after baking. Freeze for longer storage.
  2. Recipe can be adapted for mini muffins with a bake time of 8-10 minutes.
  3. This is a versatile muffin base—feel free to substitute with your favorite fruits such as raspberries, blackberries, or chopped apples.

Tools You'll Need

  • 12-cup muffin tin
  • Mixing bowls
  • Whisk
  • Spatula
  • Wire rack
  • Baking cups

Allergen Info

Check each ingredient for potential allergens, and consult a health professional if necessary.
  • Contains dairy (Greek yogurt, butter)
  • Contains eggs
  • Contains gluten (all-purpose flour, whole-wheat flour)

Nutritional Information (Per Serving)

These details are for general reference only and don't replace expert medical advice.
  • Calories: 226
  • Fats: 9 grams
  • Carbohydrates: 32 grams
  • Proteins: 5 grams