
These bite-sized apple cheesecake treats combine the tangy richness of cream cheese with sweet cinnamon apples, all nestled on a buttery graham cracker crust. I created this recipe when looking for a dessert that would satisfy my cheesecake cravings without committing to a full cake.
I first made these for a fall gathering, and they disappeared faster than any other dessert on the table. Now they're my go-to impressive but easy treat whenever I need something special without spending hours in the kitchen.
Ingredients
- Cream cheese: softened at room temperature for at least 30 minutes for the smoothest texture
- Sugar: balances the tanginess of the cream cheese without overwhelming the apple flavor
- Vanilla extract: use pure extract for the best flavor profile
- Diced apples: choose firm varieties like Granny Smith or Honeycrisp that hold their shape when baked
- Cinnamon: adds warmth and complements the apples perfectly
- Graham cracker crumbs: provides the classic cheesecake base with a slight honey sweetness
- Butter: melted and slightly cooled before mixing with crumbs for proper binding
Step-by-Step Instructions
- Prepare Your Oven:
- Set your oven to 350°F and allow it to fully preheat while you prepare the batter. Position the rack in the center of the oven for even baking.
- Make The Cheesecake Filling:
- Beat the softened cream cheese in a large bowl using an electric mixer until completely smooth with no lumps. This usually takes about 2 minutes. Add the sugar and vanilla, continuing to beat until the mixture becomes light and fluffy with a silky texture.
- Prepare The Apple Mixture:
- Fold the diced apples and cinnamon gently into the cream cheese mixture using a spatula. The goal is to distribute the apples evenly throughout without deflating the air incorporated during beating.
- Create The Graham Cracker Base:
- Mix the graham cracker crumbs and melted butter thoroughly until the mixture resembles wet sand. The crumbs should hold together when pressed between your fingers.
- Assemble The Cheesecake Bites:
- Line a standard 12-cup muffin tin with paper liners or grease well. Press about 1 tablespoon of the graham cracker mixture firmly into the bottom of each cup using the back of a measuring spoon.
- Fill And Bake:
- Spoon the apple cheesecake mixture evenly over each crust, filling to about 1/4 inch from the top. Tap the pan gently on the counter to remove any air bubbles.
- Cool And Set:
- After baking, let the cheesecake bites cool in the pan for 10 minutes, then transfer to a wire rack to cool completely. For the best texture and flavor, refrigerate for at least 2 hours before serving.
My absolute favorite part of this recipe is the textural contrast between the creamy cheesecake, tender apple pieces, and crunchy graham cracker base. I remember the first time my daughter tried these, her eyes widened with surprise at the burst of apple flavor hidden inside what looked like regular mini cheesecakes.
Apple Selection Guide
The type of apple you choose dramatically impacts the final taste of these cheesecake bites. For a classic tart contrast to the sweet cheesecake, Granny Smith apples are unbeatable. They maintain their structure during baking and provide that bright apple flavor that cuts through the richness. If you prefer a sweeter profile, Honeycrisp or Pink Lady apples offer a nice balance of sweetness and firmness. Avoid softer varieties like McIntosh or Red Delicious as they tend to break down too much during baking and release excess moisture.
Make Ahead Options
These apple cheesecake bites are perfect for preparing in advance. You can make them up to two days before serving store in an airtight container in the refrigerator with parchment paper between layers if you need to stack them. The flavors actually improve after a day as the apple and cinnamon infuse more deeply into the cheesecake. For longer storage, these bites freeze beautifully for up to one month. Simply place them on a baking sheet until frozen solid, then transfer to a freezer bag. Thaw overnight in the refrigerator before serving.
Seasonal Variations
While this recipe shines with apples, you can adapt it throughout the year using seasonal fruits. In summer, replace the apples with fresh berries or peaches no need to adjust the baking time. For winter, try pears with a hint of cardamom instead of cinnamon. During spring, rhubarb makes a delightful tangy addition though you may want to increase the sugar slightly to balance its natural tartness. The versatility of the cream cheese base makes this recipe a year-round favorite that can highlight whatever fruit is at its peak.

Recipe FAQs
- → Can I use different types of apples for these cheesecake bites?
Yes! While firmer apples like Granny Smith or Honeycrisp work best as they hold their shape during baking, you can experiment with different varieties. Sweet apples like Gala or Fuji will create a sweeter filling, while tart apples provide a nice contrast to the creamy cheese mixture.
- → How do I know when the apple cheesecake bites are fully baked?
The cheesecake bites are done when the centers are mostly set but still have a slight jiggle. The edges should appear firm and slightly pulled away from the sides of the muffin tin. Avoid overbaking, as this can cause the filling to crack and become dry.
- → Can I freeze these apple cheesecake bites?
Absolutely! These freeze beautifully for up to 3 months. Cool them completely, then place in an airtight container with parchment paper between layers. Thaw overnight in the refrigerator before serving. You can enjoy them cold or bring to room temperature for about 30 minutes.
- → What can I substitute for graham crackers in the crust?
If graham crackers aren't available, digestive biscuits make an excellent substitute. You could also use gingersnaps for a spicier crust that complements the apple filling, or vanilla wafers for a sweeter base. Just ensure they're crushed finely and mixed well with the melted butter.
- → Can I make these cheesecake bites without a muffin tin?
While a muffin tin creates the perfect individual portions, you could adapt this to an 8x8 inch baking dish to make bars. Press the crust mixture evenly on the bottom, pour the filling over, and increase baking time by about 5-10 minutes. Cut into squares once cooled.
- → What toppings would complement these apple cheesecake bites?
These bites are delicious as is, but you could enhance them with a drizzle of caramel sauce, a dollop of whipped cream, a sprinkle of chopped nuts, or even a light dusting of powdered sugar. For an extra apple flavor, consider topping with a small spoonful of warm apple compote.