Smoky Bacon Mac and Cheese

Category: Wholesome Meals for Every Day

This decadent mac and cheese elevates comfort food with smoky chipotle peppers and bacon. The creamy sauce combines cheddar and smoked gouda for exceptional depth, while a buttery panko topping adds perfect texture contrast. The dish comes together in 45 minutes, with pasta tossed in a velvety cheese sauce infused with smoked paprika and chipotle heat. Topped with extra cheese, seasoned breadcrumbs, and crispy bacon before baking, each bite delivers rich flavor with a subtle kick. Make it ahead and refrigerate for convenient meal planning — just allow extra baking time when cooking from cold.

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Updated on Fri, 09 May 2025 17:25:59 GMT
A spoon is in a bowl of macaroni and cheese. Save
A spoon is in a bowl of macaroni and cheese. | recipesbylena.com

This smoky chipotle bacon mac and cheese transforms the classic comfort dish into an indulgent experience with complex flavors. The combination of creamy cheese sauce, spicy chipotle, and crispy bacon creates a grown-up version of everyone's childhood favorite that still maintains that nostalgic appeal.

I first made this recipe during a neighborhood potluck competition and it was the first dish completely devoured. My friends still request it by name whenever we have gatherings, and it has become my signature dish for holiday dinners.

Ingredients

  • Dried pasta shells or elbows: The shells capture more sauce in their pockets making every bite extra cheesy
  • Butter: Creates the base for a rich roux that thickens the sauce perfectly
  • Yellow onion: When minced and cooked slowly adds a subtle sweetness that balances the smoky elements
  • All-purpose flour: Essential for making the roux that thickens your cheese sauce
  • Half and half and heavy cream: The combination provides the perfect richness without becoming too heavy
  • Kosher salt: Enhances all flavors without adding harshness of table salt
  • Black pepper: Adds necessary warmth and depth to complement the smoky elements
  • Smoked paprika: Brings additional smokiness that enhances the bacon and chipotle flavors
  • Chipotle peppers in adobo sauce: These deliver both heat and complex smokiness that makes this recipe unique
  • Medium cheddar cheese: Provides the classic mac and cheese flavor with excellent melting properties
  • Smoked Gouda cheese: The star ingredient that amplifies the smokiness with its distinctive nutty character
  • Panko breadcrumbs: Creates the perfect crispy contrast to the creamy sauce
  • Ancho chile pepper: Adds subtle heat and earthiness to the crunchy topping
  • Olive oil: Helps the breadcrumbs achieve perfect golden browning
  • Bacon: The crowning touch that adds both texture and rich smoky flavor

Step-by-Step Instructions

Prepare the Pasta:
Cook the pasta in well-salted water until just al dente as it will continue cooking in the oven. Drain thoroughly and set aside in a large mixing bowl. The pasta should have a slight bite to prevent mushiness in the final dish.
Create the Base:
Melt butter in a large saucepan over medium heat until it foams slightly. Add finely minced onion and cook for 3-4 minutes until translucent and soft. Sprinkle in the flour and stir continuously to prevent burning creating a blonde roux that will thicken your sauce beautifully.
Develop the Sauce:
Gradually whisk in the half and half and heavy cream ensuring no lumps remain from the flour. Add salt pepper smoked paprika and minced chipotle peppers. Whisk frequently over medium heat for 5-7 minutes until the sauce coats the back of a spoon indicating it has reached the perfect thickness.
Incorporate the Cheeses:
Remove the pan from heat and add most of the cheeses gradually by the handful allowing each addition to melt completely before adding more. Reserve about half a cup of mixed cheeses for topping later. The residual heat will melt the cheese without risking separation that can occur at higher temperatures.
Combine and Assemble:
Pour the luxurious cheese sauce over the cooked pasta in your mixing bowl. Fold gently but thoroughly to ensure every pasta piece is coated. Transfer the mixture to your prepared skillet or baking dish and sprinkle with the reserved cheese.
Create the Topping:
Mix panko breadcrumbs with ancho chile pepper and olive oil until evenly combined. Sprinkle this mixture over the mac and cheese then distribute the crumbled bacon pieces evenly across the top for maximum visual appeal and flavor in every serving.
Bake to Perfection:
Bake in a preheated 375°F oven for 15-20 minutes until bubbling around the edges and golden brown on top. For an extra crispy topping finish under the broiler for 1-2 minutes watching carefully to prevent burning.
A pan of macaroni and cheese with bacon bits. Save
A pan of macaroni and cheese with bacon bits. | recipesbylena.com

This recipe completely transformed my approach to mac and cheese. The first time I made it for my family my cheese-skeptical nephew asked for seconds and thirds. The chipotle peppers are my secret weapon they add such complexity that guests always try to guess what makes it so special.

Dairy Alternatives

For those who might need to adjust the dairy components you can substitute milk and half and half for the cream elements. The texture will be slightly less rich but still delicious. Just avoid using anything below 2% milkfat as the sauce may not thicken properly. Plant-based cheese alternatives can work but choose ones specifically designed for melting and expect a different flavor profile.

Spice Level Management

This recipe is wonderfully adaptable to different heat preferences. For a milder version use just one chipotle pepper and remove the seeds before mincing. If you love heat increase to two or even three peppers and include some of the adobo sauce from the can. The ancho chile in the topping can be reduced or omitted for sensitive palates or doubled for spice lovers.

Serving Suggestions

While perfect on its own this mac and cheese pairs beautifully with simple sides that balance its richness. A crisp green salad with vinaigrette, roasted broccoli, or garlic green beans make excellent companions. For a complete meal, consider serving alongside a rotisserie chicken or grilled steak. At potlucks or holiday spreads, this dish holds its own next to traditional favorites.

Make-Ahead Magic

The versatility of this recipe extends to its make-ahead potential. Prepare everything up to the baking step, cool completely, and refrigerate for up to 2 days. When ready to serve, let it sit at room temperature for 30 minutes before baking. This makes it perfect for entertaining or busy weeknights. You can even divide it into smaller containers for individual portions that can be baked as needed.

Recipe FAQs

→ Can I use different types of cheese in this dish?

Yes, while the combination of medium cheddar and smoked gouda creates the ideal smoky flavor profile, you can substitute with other good melting cheeses. Consider fontina, gruyère, or monterey jack. For best results, always include at least one strongly flavored cheese to maintain depth of flavor.

→ How spicy is this mac and cheese?

With 1-2 chipotle peppers in adobo sauce, this dish has a moderate heat level that builds pleasantly without overwhelming the other flavors. For a milder version, use just one pepper and remove the seeds. To increase heat, add an extra pepper or include some of the adobo sauce from the can.

→ What can I serve with this dish?

This hearty mac and cheese pairs beautifully with lighter sides like a crisp green salad, roasted vegetables, or steamed broccoli. For a complete comfort food experience, serve alongside grilled chicken, pulled pork, or smoked brisket.

→ Can I freeze this mac and cheese?

Yes, you can freeze this dish unbaked. Prepare as directed but don't bake, cover tightly with foil and freeze for up to 3 months. When ready to serve, thaw overnight in the refrigerator and bake at 375°F for 30-40 minutes until hot and bubbly.

→ How do I get the crispiest panko topping?

For an extra-crispy topping, make sure to toss the panko thoroughly with olive oil before sprinkling over the mac and cheese. Additionally, follow the recommendation to broil for 1-2 minutes after baking, watching carefully to prevent burning.

→ Is there a way to make this dish lighter?

As noted in the recipe, you can substitute milk and half-and-half for the heavy cream to reduce calories. However, avoid using milk with less than 2% fat, as it won't produce the same creamy texture. You could also reduce the amount of cheese slightly or use a smaller portion of bacon.

Smoky Chipotle Bacon Mac

Decadent pasta with smoky bacon, chipotle heat, and a blend of cheddar and gouda cheeses under a crispy golden panko topping.

Prep Time
15 min
Cooking Time
30 min
Total Time
45 min
By: Lena

Category: Lunch & Dinner

Skill Level: Medium

Cuisine Type: American

Yield: 6 Serves

Dietary Preferences: ~

Ingredients

→ Main Ingredients

01 16 oz dried pasta shells or elbows
02 1/2 cup butter
03 1/2 yellow onion, minced
04 1/4 cup all-purpose flour
05 3 cups half and half
06 2 cups heavy cream
07 1 1/2 tsp kosher salt
08 1/2 - 1 tsp black pepper
09 1/2 tsp smoked paprika
10 1-2 chipotle peppers in adobo sauce, minced
11 3 cups medium cheddar cheese, shredded
12 2 cups smoked Gouda cheese, shredded
13 8 slices bacon, cooked and crumbled

→ Topping

14 2/3 cup panko breadcrumbs
15 1/2 tsp ancho chile pepper
16 2-3 tsp olive oil

Steps to Follow

Step 01

Boil pasta in a large pot of water. Drain and set aside in a large mixing bowl. Butter or grease a large oven-safe skillet or 9x13-inch baking dish. Preheat oven to 375°F.

Step 02

Add butter to a large saucepan and melt over medium heat. Add onion and cook for 3-4 minutes until softened. Stir in flour and cook for about 1 minute.

Step 03

Whisk in half and half and heavy cream, ensuring no lumps remain. Stir in salt, black pepper, smoked paprika, and minced chipotle peppers. Whisk over medium heat for 5-7 minutes until thickened.

Step 04

Remove pan from heat and stir in most of the shredded cheeses, reserving 1/2 cup for topping. Stir until the cheese is completely melted.

Step 05

Pour cheese sauce over the cooked pasta in the mixing bowl. Stir to combine thoroughly, then transfer to the prepared skillet or baking dish. Sprinkle with the reserved shredded cheese.

Step 06

In a small bowl, combine panko breadcrumbs, ancho chile pepper, and olive oil. Sprinkle over the mac and cheese mixture, then top with cooked bacon.

Step 07

Bake in the preheated oven for 15-20 minutes, or until the dish is hot and bubbly and the panko topping is golden brown. For a crispier topping, broil for 1-2 minutes after baking.

Additional Notes

  1. To reduce calories, milk and half and half can be used instead of heavy cream. Avoid going below 2% milkfat to maintain creaminess.
  2. For make-ahead preparation, assemble the dish but do not bake. Cover tightly with foil and refrigerate for up to 2 days. Allow it to sit at room temperature for 30 minutes before baking.

Tools You'll Need

  • Large pot
  • Large mixing bowl
  • Large saucepan
  • Oven-safe skillet or 9x13-inch baking dish
  • Whisk
  • Small bowl

Allergen Info

Check each ingredient for potential allergens, and consult a health professional if necessary.
  • Contains dairy (cheese, heavy cream, butter)
  • Contains gluten (pasta, all-purpose flour, panko breadcrumbs)

Nutritional Information (Per Serving)

These details are for general reference only and don't replace expert medical advice.
  • Calories: 1517
  • Fats: 110 grams
  • Carbohydrates: 80 grams
  • Proteins: 51 grams