
This autumn-inspired small batch apple pumpkin streusel muffin recipe combines the best seasonal flavors in perfectly portioned bites. The warmth of pumpkin pie spice mingles with fresh apple chunks and a buttery streusel topping to create muffins that taste like fall in every bite.
I created these muffins when I had leftover pumpkin puree and a lone apple in my fruit bowl. Now they've become my signature fall breakfast treat when I don't want to commit to a dozen muffins sitting on my counter.
Ingredients
- All purpose flour: Provides structure while staying tender when measured correctly
- Cold unsalted butter: Creates those perfect crumbly pockets in the streusel
- Light brown sugar: Adds moisture and caramel notes that complement the apple
- Fresh Honeycrisp apples: Offer the perfect balance of sweetness and structure
- Canned pumpkin puree: Brings moisture and authentic flavor without excess liquid
- Pumpkin pie spice: Delivers warm fall flavor without measuring multiple spices
- Sour cream: Adds richness and helps create a tender crumb
- Egg yolk: Provides binding and richness without making the small batch too eggy
Step-by-Step Instructions
- Prepare the streusel topping:
- Work cold butter into dry ingredients until you achieve pea-sized crumbles. The warmth of your fingers is actually perfect for this small amount of streusel. When the mixture looks like coarse sand with some larger butter pieces remaining, gently fold in the reserved diced apple pieces. The refrigeration step is crucial as it keeps the butter cold and ensures your streusel stays crumbly during baking.
- Mix the wet ingredients:
- Combine sour cream, pumpkin puree, juice, sugars, egg yolk and vanilla in a bowl until completely smooth. The room temperature ingredients ensure everything incorporates evenly without overmixing. Add the apple cubes and stir gently to distribute them throughout the batter.
- Combine with dry ingredients:
- Sprinkle the flour mixture over wet ingredients and fold together using a light hand. Stop mixing the moment you no longer see dry flour streaks. Overmixing activates gluten which can make your muffins tough instead of tender.
- Fill and top muffin cups:
- Divide batter evenly among four muffin cups. They should be nearly full to achieve nice domed tops. Sprinkle generous amounts of the chilled streusel on each muffin, gently pressing into the batter slightly so it adheres during baking.
- Master the temperature change:
- Bake initially at high heat to create that bakery-style rise, then reduce temperature to finish cooking through without burning. This temperature change is the professional secret to perfectly domed muffin tops.

The first time I served these to my neighbor, she insisted I had purchased them from our local bakery. The temperature change during baking creates that professional bakery-style dome that makes them look so impressive despite being so simple to make.
Perfect Apple Selection
Honeycrisp apples work wonderfully in this recipe because they maintain their structure during baking while providing natural sweetness. If substituting, look for firmer apple varieties like Pink Lady, Braeburn, or Granny Smith if you prefer a more tart flavor profile. Avoid softer varieties like McIntosh that can become mushy during baking.
Using Leftover Pumpkin
Since this small batch recipe uses just 5 tablespoons of pumpkin puree, you'll have plenty left in your can. Store leftover pumpkin in an airtight container in the refrigerator for up to a week. Use it in smoothies, oatmeal, or make pumpkin butter by simmering with maple syrup and spices. You can also freeze leftover pumpkin in an ice cube tray for easy portioning in future recipes.
Customization Options
These muffins welcome gentle customization. Add a handful of chopped walnuts or pecans to the streusel for added crunch. Replace the vanilla extract with maple extract for deeper fall flavor. For a special occasion version, drizzle cooled muffins with a simple glaze made from powdered sugar and apple cider. The adaptable base recipe works beautifully with these variations.
Recipe FAQs
- → Can I double this apple pumpkin muffin recipe?
Yes, this small batch recipe can be doubled easily to make 8 muffins instead of 4. Simply double all the ingredients while following the same mixing and baking instructions. The baking time should remain approximately the same.
- → What type of apple works best in these muffins?
Honeycrisp apples are recommended for their sweet-tart flavor and firm texture that holds up well during baking. However, you can substitute with Granny Smith (more tart), Gala, Fuji, or any apple variety you prefer or have on hand.
- → Why does the baking temperature change during cooking?
The initial high heat (425°F for 5 minutes) creates steam that helps the muffins rise quickly and develop domed tops. Reducing to 350°F afterwards ensures the inside bakes evenly without burning the outside. Don't skip this temperature change - set a timer to remind yourself!
- → What can I do with leftover canned pumpkin?
Since this small batch recipe only uses 5 tablespoons of pumpkin, you'll have leftovers from a standard can. Leftover pumpkin can be frozen in tablespoon portions, or used in other small batch recipes like pumpkin bread, pancakes, smoothies, or even stirred into oatmeal.
- → Can I make these into mini muffins instead?
Yes, this batter can be used to make approximately 10-12 mini muffins. For mini muffins, skip the initial high-heat baking and cook at 350°F throughout. Begin checking for doneness around 12 minutes. The muffins are ready when a toothpick inserted comes out mostly clean.
- → How should I store these muffins?
Store the cooled muffins in an airtight container at room temperature for 3-5 days. For longer storage, wrap individual muffins in plastic wrap, place in a freezer bag, and freeze for up to 3 months. Thaw frozen muffins at room temperature when ready to enjoy.