Butternut Squash Stuffed Shells

Category: Wholesome Meals for Every Day

These stuffed shells combine the sweet, earthy flavor of butternut squash with creamy ricotta and melted mozzarella. Jumbo pasta shells act as perfect vessels for the cheesy filling, while marinara sauce adds a tangy contrast. The entire dish bakes until golden and bubbly, creating a comforting meal that's both impressive and straightforward to prepare. Ready in just 50 minutes, this dish serves 4 and can be customized with additional vegetables or made ahead for convenient meal planning. Each serving offers a balanced combination of carbohydrates, protein, and vegetables in one delicious package.

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Updated on Wed, 15 Oct 2025 10:24:59 GMT
A pan of pasta with cheese and herbs. Save
A pan of pasta with cheese and herbs. | recipesbylena.com

This butternut squash-stuffed shells recipe transforms ordinary pasta into a comforting, seasonal delight that balances creamy cheese with sweet squash. I discovered this combination when looking for ways to use up fall harvest vegetables, and it's become a staple in my dinner rotation.

I first created this dish for a potluck dinner party, and it disappeared faster than any other dish on the table. Now my family requests it regularly throughout fall and winter months.

Ingredients

  • Jumbo pasta shells: look impressive and hold the perfect amount of filling
  • Butternut squash: provides natural sweetness and velvety texture
  • Ricotta cheese: creates a creamy, smooth base for the filling
  • Mozzarella cheese: delivers that irresistible melty stretch
  • Parmesan: adds a sharp, salty bite that balances the sweet squash
  • Garlic and onion powder: provide aromatic depth without the work of fresh aromatics
  • Marinara sauce: brings acidity that cuts through the richness
  • Fresh basil: brightens everything with a pop of color and freshness

Step-by-Step Instructions

Pasta Preparation:
Cook jumbo shells until they're just al dente, about 8 minutes. They'll continue cooking in the oven, so slightly undercook them to prevent mushiness. After draining, lay them out separately on a baking sheet to prevent sticking.
Squash Cooking:
Steam or boil butternut squash cubes until they're fork tender, approximately 10 to 15 minutes. Drain thoroughly and mash while still warm for the smoothest texture. Let it cool slightly before combining with cheeses to prevent the cheeses from melting prematurely.
Filling Creation:
Combine the mashed butternut squash with ricotta, half the mozzarella, Parmesan, and seasonings until everything is completely incorporated. Taste and adjust seasoning before stuffing the shells. The filling should be thick enough to hold its shape but soft enough to work with.
Assembly Process:
Spread half the marinara sauce evenly across your baking dish. Using a spoon or piping bag, generously fill each shell with about 2 tablespoons of filling. Arrange stuffed shells in the baking dish with slight space between them to allow even heating.
Baking Perfection:
Cover the filled shells with remaining sauce and sprinkle with reserved mozzarella. Bake uncovered until the cheese becomes golden and bubbly, and the edges of the shells turn slightly crispy, about 25 to 30 minutes.
A dish of pasta with cheese and herbs. Save
A dish of pasta with cheese and herbs. | recipesbylena.com

Butternut squash is truly the star ingredient here. I love how its natural sweetness develops during roasting, creating a complexity that store bought alternatives just can't match. My youngest daughter, who normally avoids vegetables, devours these shells without hesitation.

Storage Tips

These stuffed shells maintain their quality remarkably well in the refrigerator. Store leftovers in an airtight container for up to 4 days. For best results when reheating, add a splash of water or extra marinara sauce before covering with foil and heating at 350°F until warmed through, about 15 minutes.

Make It Your Own

While this recipe is delicious as written, it welcomes customization. Try adding sautéed spinach, kale, or chard to the filling for extra nutrition and color. For meat lovers, incorporate cooked Italian sausage or pancetta. If you prefer a nuttier flavor profile, add a handful of toasted pine nuts or walnuts to the filling mixture.

Serving Suggestions

These stuffed shells pair beautifully with a simple arugula salad dressed with lemon vinaigrette to cut through the richness. For a complete meal, serve alongside garlic bread or rosemary focaccia to soak up the extra sauce. A glass of light bodied red wine like Chianti or Pinot Noir complements the flavors perfectly.

Recipe FAQs

→ Can I prepare these stuffed shells ahead of time?

Yes! You can assemble the entire dish up to 24 hours in advance and store it covered in the refrigerator. When ready to serve, simply bake for an additional 5-10 minutes since the shells will be cold from refrigeration.

→ What can I substitute for butternut squash?

Sweet potato, pumpkin, or acorn squash work well as substitutes with similar cooking times and flavor profiles. Each will bring its unique taste while maintaining the creamy texture needed for the filling.

→ How do I make this dish vegan?

Substitute the ricotta with cashew or tofu-based ricotta alternative, and use plant-based mozzarella and parmesan alternatives. The rest of the ingredients are naturally vegan-friendly.

→ What sides pair well with stuffed shells?

A simple green salad with vinaigrette dressing, garlic bread, roasted vegetables, or sautéed spinach all complement the rich flavors of the stuffed shells beautifully.

→ Can I freeze these stuffed shells?

Yes, these freeze exceptionally well. Assemble the dish but don't bake it. Cover tightly with foil and freeze for up to 3 months. When ready to serve, bake from frozen at 375°F for about 45-50 minutes until heated through and bubbly.

→ How do I know when butternut squash is properly cooked?

Butternut squash is properly cooked when it can be easily pierced with a fork and mashes without resistance. Undercooked squash will be firm and difficult to mash, while overcooked squash may become too watery.

Butternut Squash Stuffed Shells

Tender pasta shells stuffed with butternut squash, ricotta, and cheese blend, baked in marinara and garnished with fresh basil.

Prep Time
20 min
Cooking Time
30 min
Total Time
50 min
By: Lena

Category: Lunch & Dinner

Skill Level: Medium

Cuisine Type: Italian

Yield: 4 Serves

Dietary Preferences: Vegetarian

Ingredients

01 12 jumbo pasta shells
02 2 cups butternut squash, peeled and cubed
03 1 cup ricotta cheese
04 1 cup shredded mozzarella cheese
05 1/2 cup grated Parmesan cheese
06 1 teaspoon garlic powder
07 1 teaspoon onion powder
08 Salt and pepper to taste
09 2 cups marinara sauce
10 Fresh basil for garnish

Steps to Follow

Step 01

Preheat the oven to 375°F (190°C).

Step 02

Cook the jumbo pasta shells according to package instructions until al dente. Drain and set aside.

Step 03

In a pot, steam or boil the butternut squash until tender, about 10-15 minutes. Drain and mash.

Step 04

In a mixing bowl, combine the mashed butternut squash, ricotta cheese, half of the mozzarella cheese, Parmesan cheese, garlic powder, onion powder, salt, and pepper.

Step 05

Stuff each cooked pasta shell with the butternut squash mixture.

Step 06

Spread half of the marinara sauce on the bottom of a baking dish. Place the stuffed shells in the baking dish and top with the remaining marinara sauce and the rest of the mozzarella cheese.

Step 07

Bake in the preheated oven for 25-30 minutes, until the cheese is bubbly and golden.

Step 08

Garnish with fresh basil before serving.

Additional Notes

  1. Feel free to add spinach or other vegetables to the filling for extra nutrition.
  2. This dish can be made ahead of time and stored in the refrigerator before baking.
  3. For a vegan version, substitute ricotta and mozzarella with plant-based alternatives.

Allergen Info

Check each ingredient for potential allergens, and consult a health professional if necessary.
  • Contains dairy
  • Contains gluten

Nutritional Information (Per Serving)

These details are for general reference only and don't replace expert medical advice.
  • Calories: 250
  • Fats: 10 grams
  • Carbohydrates: 30 grams
  • Proteins: 12 grams